{ "_id": "6a1edd72b401979e734100c5", "Package": "aldvmm", "Type": "Package", "Title": "Adjusted Limited Dependent Variable Mixture Models", "Version": "0.9.0", "Authors@R": "c(person(given = \"Mark\", family = \"Pletscher\", email = \"pletscher.mark@gmail.com\",\nrole = c(\"aut\", \"cre\", \"cph\")),\nperson(given = \"Achim\", family = \"Zeileis\", email = \"Achim.Zeileis@R-project.org\",\nrole = c(\"ctb\"), comment = c(ORCID = \"0000-0003-0918-3766\")))", "Date": "2025-11-21", "Description": "The goal of the package 'aldvmm' is to fit adjusted\nlimited dependent variable mixture models of health state\nutilities. Adjusted limited dependent variable mixture models\nare finite mixtures of normal distributions with an\naccumulation of density mass at the limits, and a gap between\n100% quality of life and the next smaller utility value. The\npackage 'aldvmm' uses the likelihood and expected value\nfunctions proposed by Hernandez Alava and Wailoo (2015)\n using normal component\ndistributions and a multinomial logit model of probabilities of\ncomponent membership.", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.3", "URL": "https://github.com/pletschm/aldvmm/", "BugReports": "https://github.com/pletschm/aldvmm/issues", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/pak/sysreqs": "cmake", "Repository": "https://pletschm.r-universe.dev", "Date/Publication": "2025-11-21 21:49:21 UTC", "RemoteUrl": "https://github.com/pletschm/aldvmm", "RemoteRef": "HEAD", "RemoteSha": "0bc641ad9d06b7a9a62619d5d63489e307a13a91", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-20 08:15:22 UTC", "User": "root" }, "Author": "Mark Pletscher [aut, cre, cph],\nAchim Zeileis [ctb] (ORCID: )", "Maintainer": "Mark Pletscher ", "MD5sum": "01afc12107c8b743c31440049e434e07", "_user": "pletschm", "_type": "src", "_file": "aldvmm_0.9.0.tar.gz", "_fileid": "fb26ecba835d1286c143d1088c504f3d0058c0350bb96005519526afd7a911dc", "_filesize": 995323, "_sha256": "fb26ecba835d1286c143d1088c504f3d0058c0350bb96005519526afd7a911dc", "_created": "2026-05-20T08:15:22.000Z", "_published": "2026-06-02T13:41:06.853Z", "_distro": "noble", "_jobs": [ { "job": 79084309024, "time": 178, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7104767933" }, { "job": 79084310027, "time": 177, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7104767281" }, { "job": 79084309143, "time": 172, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7104758874" }, { "job": 79084308614, "time": 160, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7104752673" }, { "job": 79084307972, "time": 197, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7104705218" }, { "job": 79084308052, "time": 122, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7359350784" }, { "job": 79084308486, "time": 166, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7104764006" }, { "job": 79084310365, "time": 134, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7104753313" }, { "job": 79084308963, "time": 120, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7104747524" } ], "_buildurl": "https://github.com/r-universe/pletschm/actions/runs/26150070730", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/pletschm/aldvmm", "_commit": { "id": "0bc641ad9d06b7a9a62619d5d63489e307a13a91", "author": "Mark Pletscher <50183364+pletschm@users.noreply.github.com>", "committer": "GitHub ", "message": "Merge pull request #54 from pletschm/develop\n\nDevelop", "time": 1763761761 }, "_maintainer": { "name": "Mark Pletscher", "email": "pletscher.mark@gmail.com" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "numDeriv", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "checkmate", "role": "Imports" }, { "package": "optimx", "role": "Imports" }, { "package": "Formula", "role": "Imports" }, { "package": "sandwich", "role": "Imports" }, { "package": "lmtest", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "kableExtra", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" }, { "package": "tinytex", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "covr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "bookdown", "role": "Suggests" }, { "package": "xtable", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "scales", "role": "Suggests" }, { "package": "reshape2", "role": "Suggests" } ], "_owner": "pletschm", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-27", "n": 1 }, { "week": "2025-47", "n": 2 } ], "_tags": [ { "name": "0.9.0", "date": "2025-11-21" } ], "_topics": [ "clinical-trials", "cost-effectiveness", "eq5d", "finite-mixture", "health-economics", "hta", "hui", "limited-dependent-variable", "mapping", "mixture-model", "patient-reported-outcomes", "quality-of-life", "utilities" ], "_stars": 4, "_contributors": [ { "user": "pletschm", "count": 169, "uuid": 50183364 } ], "_userbio": { "uuid": 50183364, "type": "user", "name": "Mark Pletscher" }, "_downloads": { "count": 306, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/aldvmm" }, "_devurl": "https://github.com/pletschm/aldvmm", "_searchresults": 2, "_rbuild": "4.6.0", "_assets": [ "extra/aldvmm.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/pletschm/aldvmm", "_realowner": "pletschm", "_cranurl": true, "_releases": [ { "version": "0.8.3", "date": "2021-06-16" }, { "version": "0.8.4", "date": "2021-07-19" }, { "version": "0.8.5", "date": "2022-10-12" }, { "version": "0.8.6", "date": "2023-06-06" }, { "version": "0.8.7", "date": "2023-07-08" }, { "version": "0.8.8", "date": "2023-10-28" }, { "version": "0.9.0", "date": "2025-11-21" } ], "_exports": [ "aldvmm", "aldvmm.check", "aldvmm.cv", "aldvmm.getnames", "aldvmm.getpar", "aldvmm.gof", "aldvmm.gr", "aldvmm.init", "aldvmm.ll", "aldvmm.mm", "aldvmm.pred", "aldvmm.sc", "aldvmm.sefit", "aldvmm.sum", "aldvmm.tm", "coef.aldvmm", "estfun.aldvmm", "formula.aldvmm", "model.matrix.aldvmm", "nobs.aldvmm", "predict.aldvmm", "print.aldvmm", "residuals.aldvmm", "summary.aldvmm", "terms.aldvmm", "update.aldvmm", "vcov.aldvmm" ], "_datasets": [ { "name": "utility", "title": "Simulated Example Data of Health State Utilities.", "object": "utility", "class": [ "data.frame" ], "fields": [ "female", "age", "eq5d" ], "rows": 200, "table": true, "tojson": true } ], "_help": [ { "page": "aldvmm-package", "title": "aldvmm: Adjusted Limited Dependent Variable Mixture Models", "topics": [ "aldvmm-package" ] }, { "page": "aldvmm", "title": "Fitting Adjusted Limited Dependent Variable Mixture Models", "topics": [ "aldvmm" ] }, { "page": "aldvmm.check", "title": "Checking the Validity of Objects Supplied to 'aldvmm()'", "topics": [ "aldvmm.check" ] }, { "page": "aldvmm.cv", "title": "Numerical Approximation of Covariance Matrix", "topics": [ "aldvmm.cv" ] }, { "page": "aldvmm.getnames", "title": "Creating Names of Parameter Vectors", "topics": [ "aldvmm.getnames" ] }, { "page": "aldvmm.getpar", "title": "Extracting Parameters from Parameter Vector into Nested List.", "topics": [ "aldvmm.getpar" ] }, { "page": "aldvmm.gof", "title": "Calculating Goodness of Fit Measures", "topics": [ "aldvmm.gof" ] }, { "page": "aldvmm.gr", "title": "Calculating Numeric Gradients of the Negative Log-Likelihood", "topics": [ "aldvmm.gr" ] }, { "page": "aldvmm.init", "title": "Creating Initial Values", "topics": [ "aldvmm.init" ] }, { "page": "aldvmm.ll", "title": "Calculating the Negative Log-Likelihood of the Adjusted Limited Dependent Variable Mixture Model", "topics": [ "aldvmm.ll" ] }, { "page": "aldvmm.mm", "title": "Creating Design Matrices", "topics": [ "aldvmm.mm" ] }, { "page": "aldvmm.pred", "title": "Predicting Expected Values from Adjusted Limited Dependent Variable Mixture Models", "topics": [ "aldvmm.pred" ] }, { "page": "aldvmm.sc", "title": "Calculating analytical Gradients of the Negative Log-Likelihood for each observation", "topics": [ "aldvmm.sc" ] }, { "page": "aldvmm.sefit", "title": "Calculating Standard Errors of Fitted and Predicted Outcomes", "topics": [ "aldvmm.sefit" ] }, { "page": "aldvmm.sum", "title": "Creating Summary Table", "topics": [ "aldvmm.sum" ] }, { "page": "aldvmm.tm", "title": "Creating Terms Objects", "topics": [ "aldvmm.tm" ] }, { "page": "coef", "title": "Extract Coefficients of Adjusted Limited Dependent Variable Mixture Model Fits", "topics": [ "coef.aldvmm" ] }, { "page": "estfun", "title": "Create Matrix of Adjusted Limited Dependent Variable Mixture Model Gradients per Observation", "topics": [ "estfun.aldvmm" ] }, { "page": "formula", "title": "Extract Adjusted Limited Dependent Variable Mixture Model Formula", "topics": [ "formula.aldvmm" ] }, { "page": "model.matrix", "title": "Extract Adjusted Limited Dependent Variable Mixture Model Model Matrices", "topics": [ "model.matrix.aldvmm" ] }, { "page": "nobs", "title": "Extract Adjusted Limited Dependent Variable Mixture Model Number of Observations", "topics": [ "nobs.aldvmm" ] }, { "page": "predict", "title": "Predict Method for Adjusted Limited Dependent Variable Mixture Model Fits", "topics": [ "predict.aldvmm" ] }, { "page": "print", "title": "Print Adjusted Limited Dependent Variable Mixture Model Fits", "topics": [ "print.aldvmm" ] }, { "page": "print.summary", "title": "Printing Adjusted Limited Dependent Variable Mixture Model Summaries", "topics": [ "print.summary.aldvmm" ] }, { "page": "residuals", "title": "Extract Adjusted Limited Dependent Variable Mixture Model Residuals", "topics": [ "residuals.aldvmm" ] }, { "page": "summary", "title": "Summarizing Adjusted Limited Dependent Variable Mixture Model Fits", "topics": [ "summary.aldvmm" ] }, { "page": "terms", "title": "Extract Adjusted Limited Dependent Variable Mixture Model Terms", "topics": [ "terms.aldvmm" ] }, { "page": "update", "title": "Update Adjusted Limited Dependent Variable Mixture Model Fit", "topics": [ "update.aldvmm" ] }, { "page": "utility", "title": "Simulated Example Data of Health State Utilities.", "topics": [ "utility" ] }, { "page": "vcov", "title": "Extract Adjusted Limited Dependent Variable Mixture Model Covariance Matrix", "topics": [ "vcov.aldvmm" ] } ], "_readme": "https://github.com/pletschm/aldvmm/raw/HEAD/README.md", "_rundeps": [ "backports", "checkmate", "Formula", "lattice", "lmtest", "nloptr", "numDeriv", "optimx", "pracma", "sandwich", "zoo" ], "_vignettes": [ { "source": "html_vignette.Rmd", "filename": "html_vignette.html", "title": "Adjusted Limited Dependent Variable Mixture Models of Health State Utilities in R", "author": "Mark Pletscher", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Methods", "Installation", "Data", "Examples", "Model 1: Default settings", "Model 1: Comparison of optimization methods", "Model 1: Constrained optimization with user-defined initial values", "Model 1: Single-component model", "Model 2: User-defined starting values", "Comparison to STATA\\textsuperscript{\\textregistered} results", "Discussion", "References", "Appendix", "Availability of a complete covariance matrix by optimization method", "Example calculation of average treatment effects on the treated", "Example calculation of robust and clustered standard errors", "Example calculation of modified Hosmer-Lemeshow test", "R code for the estimation of reference cases", "STATA\\textsuperscript", "ALDVMM likelihood and gradient functions" ], "created": "2023-06-21 15:31:34", "modified": "2025-11-21 20:48:33", "commits": 10 } ], "_score": 4.6020599913279625, "_indexed": true, "_nocasepkg": "aldvmm", "_universes": [ "pletschm" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.9.0", "date": "2026-05-20T08:17:50.000Z", "distro": "noble", "commit": "0bc641ad9d06b7a9a62619d5d63489e307a13a91", "fileid": "e42c2ea21adc7d0a43ffe514534b1c53ca53cca1ca76269a0b7f719805237803", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pletschm/actions/runs/26150070730" }, { "r": "4.6.0", "os": "linux", "version": "0.9.0", "date": "2026-05-20T08:17:52.000Z", "distro": "noble", "commit": "0bc641ad9d06b7a9a62619d5d63489e307a13a91", "fileid": "edea92a68f8666ef9838396bb10a6ef3b67e76a1d2939e9b80f745d952f05192", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pletschm/actions/runs/26150070730" }, { "r": "4.5.3", "os": "mac", "version": "0.9.0", "date": "2026-05-20T08:17:47.000Z", "commit": "0bc641ad9d06b7a9a62619d5d63489e307a13a91", "fileid": "0b50411b6b21e07bfefc241bd4f673c182c737849426aca581474048ef5243c3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pletschm/actions/runs/26150070730" }, { "r": "4.6.0", "os": "mac", "version": "0.9.0", "date": "2026-05-20T08:17:28.000Z", "commit": "0bc641ad9d06b7a9a62619d5d63489e307a13a91", "fileid": "997ecb1e927ae99054fd85c0f463bfa9508c37437222cdbf25acadc3dbcce2e1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pletschm/actions/runs/26150070730" }, { "r": "4.7.0", "os": "win", "version": "0.9.0", "date": "2026-05-20T08:17:25.000Z", "commit": "0bc641ad9d06b7a9a62619d5d63489e307a13a91", "fileid": "cdceedd0705110d75bce4d1ea72429b5057baeb954e8c365ac68b6fb4b3bf6da", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pletschm/actions/runs/26150070730" }, { "r": "4.5.3", "os": "win", "version": "0.9.0", "date": "2026-05-20T08:17:01.000Z", "commit": "0bc641ad9d06b7a9a62619d5d63489e307a13a91", "fileid": "f7c35f7c45178a6391244a769f922646329a2e6646f69250f53d46a0242af10d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pletschm/actions/runs/26150070730" }, { "r": "4.6.0", "os": "win", "version": "0.9.0", "date": "2026-05-20T08:16:41.000Z", "commit": "0bc641ad9d06b7a9a62619d5d63489e307a13a91", "fileid": "97c2d38d7dcb641d310f6a95ebccbd8a0b3983e60a1e6672ee450052ece01f85", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/pletschm/actions/runs/26150070730" }, { "r": "4.6.0", "os": "wasm", "version": "0.9.0", "date": "2026-06-02T13:40:35.000Z", "commit": "0bc641ad9d06b7a9a62619d5d63489e307a13a91", "fileid": "b5d512bfee1485db0bc2c25d4804ba6f37ec3c044b33a985e3096f1efa24423f", "status": "success", "buildurl": "https://github.com/r-universe/pletschm/actions/runs/26150070730" } ] }